PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019383m
Common NameCICLE_v10019383mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 603aa    MW: 65117 Da    PI: 6.94
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019383mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.8e-30246305159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +v+++tYeg+Hnh+
  Ciclev10019383m 246 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSVLITTYEGTHNHP 305
                      58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31231307IPR003657WRKY domain
SuperFamilySSF1182903.01E-27239307IPR003657WRKY domain
PROSITE profilePS5081128.483241307IPR003657WRKY domain
SMARTSM007741.6E-36246306IPR003657WRKY domain
PfamPF031068.5E-27247305IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MEEKRAMDDV LRISGRTGAA ADEEKGVDSV GDDHKEEVVA EHPILTNAKG SSLGPESKPS  60
SSSRKEQDDQ LETARAEMGE VRQENEKLKM YLNRIMKDYQ TLQTQFVNIV HQEAKKSTET  120
SNDHDRDKEE VELVSLSLGR FPSDSKKDEK NKTSSLVKEE KQFQEGLSLA LDCKFEASNK  180
SDANESLTNR SPAQSLEEPK EEAGETWPPG KGLNKTMRNG DDEMLQQSHV KKARVSVRAR  240
CDTPTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPSCPV RKQVQRCAED MSVLITTYEG  300
THNHPLPVSA TAMASTTSAA ASMLLSGSTS SSSSSSRPGS TAAITAPNNL LMHGLNFYLS  360
DKSKQIYAPN SSSSLSASPL HPTITLDLTT TTAPSSSSSP FSRFTSNYPP APRYSSTNLN  420
FSSTESSSLM SWSNNGLLSY GSCTQPYIKN NQIGSLNMGS RQPADNIFQS YMQKNNPNPN  480
LPPQQSLPAE TIAAATKAIT ADPSFQSALA VALKSIIGNG NGSGVNNNQV NGDNLGQKLK  540
WGEQFLETVK GGGCATSYLN KSSSASSHHQ PGSLIFLPPN SLPFSTSKSA SASPADDREH  600
TD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A9e-222463071777Probable WRKY transcription factor 4
1wj2_A9e-222463071777Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439640.10.0hypothetical protein CICLE_v10019383mg
TrEMBLV4TMH90.0V4TMH9_9R
STRINGVIT_17s0000g05810.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-71WRKY DNA-binding protein 72